J4_9GUT_002

3D structure

PDB id

9GUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (bS1 resolved)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GUT|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GUT_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0885

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GUT|1|A|G|142
9GUT|1|A|A|143
9GUT|1|A|G|144
*
9GUT|1|A|C|178
9GUT|1|A|A|179
9GUT|1|A|U|180
9GUT|1|A|A|181
9GUT|1|A|A|182
9GUT|1|A|C|183
9GUT|1|A|G|184
*
9GUT|1|A|C|193
9GUT|1|A|C|194
9GUT|1|A|A|195
9GUT|1|A|A|196
9GUT|1|A|A|197
9GUT|1|A|G|198
*
9GUT|1|A|U|219
9GUT|1|A|G|220
9GUT|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20