J4_9GUV_002

3D structure

PDB id

9GUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (closed-head)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GUV|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GUV_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0909

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GUV|1|A|G|142
9GUV|1|A|A|143
9GUV|1|A|G|144
*
9GUV|1|A|C|178
9GUV|1|A|A|179
9GUV|1|A|U|180
9GUV|1|A|A|181
9GUV|1|A|A|182
9GUV|1|A|C|183
9GUV|1|A|G|184
*
9GUV|1|A|C|193
9GUV|1|A|C|194
9GUV|1|A|A|195
9GUV|1|A|A|196
9GUV|1|A|A|197
9GUV|1|A|G|198
*
9GUV|1|A|U|219
9GUV|1|A|G|220
9GUV|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20