J4_9GUW_002

3D structure

PDB id

9GUW (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S-TEC (TEC in expressome position) Inactive state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GUW|1|A|C|183, 9GUW|1|A|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GUW_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1729

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GUW|1|A|G|142
9GUW|1|A|A|143
9GUW|1|A|G|144
*
9GUW|1|A|C|178
9GUW|1|A|A|179
9GUW|1|A|U|180
9GUW|1|A|A|181
9GUW|1|A|A|182
9GUW|1|A|C|183
9GUW|1|A|G|184
*
9GUW|1|A|C|193
9GUW|1|A|C|194
9GUW|1|A|A|195
9GUW|1|A|A|196
9GUW|1|A|A|197
9GUW|1|A|G|198
*
9GUW|1|A|U|219
9GUW|1|A|G|220
9GUW|1|A|C|221

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

30S ribosomal protein S20