J4_9GXX_002

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GXX|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GXX_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1353

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GXX|1|A|G|142
9GXX|1|A|A|143
9GXX|1|A|G|144
*
9GXX|1|A|C|178
9GXX|1|A|A|179
9GXX|1|A|U|180
9GXX|1|A|A|181
9GXX|1|A|A|182
9GXX|1|A|C|183
9GXX|1|A|G|184
*
9GXX|1|A|C|193
9GXX|1|A|C|194
9GXX|1|A|A|195
9GXX|1|A|A|196
9GXX|1|A|A|197
9GXX|1|A|G|198
*
9GXX|1|A|U|219
9GXX|1|A|G|220
9GXX|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20