J4_9GXX_006

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9GXX|1|a|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GXX_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0959

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9GXX|1|a|C|268
9GXX|1|a|C|269
*
9GXX|1|a|G|370
9GXX|1|a|A|371
9GXX|1|a|G|372
9GXX|1|a|U|373
9GXX|1|a|A|374
9GXX|1|a|G|375
*
9GXX|1|a|U|399
9GXX|1|a|G|400
9GXX|1|a|A|401
9GXX|1|a|A|402
9GXX|1|a|U|403
9GXX|1|a|A|404
9GXX|1|a|U|405
9GXX|1|a|G|406
*
9GXX|1|a|C|421
9GXX|1|a|A|422
9GXX|1|a|A|423
9GXX|1|a|G|424

Current chains

Chain a

23S rRNA

Nearby chains

Chain h

Large ribosomal subunit protein bL9

Chain w

Large ribosomal subunit protein bL28