J4_9GXX_011

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9GXX|1|a|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GXX_011 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0448

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9GXX|1|a|U|1313
9GXX|1|a|C|1314
*
9GXX|1|a|G|1338
9GXX|1|a|G|1339
9GXX|1|a|U|1340
9GXX|1|a|G|1341
9GXX|1|a|A|1342
9GXX|1|a|G|1343
*
9GXX|1|a|C|1404
9GXX|1|a|U|1405
*
9GXX|1|a|A|1597
9GXX|1|a|A|1598
9GXX|1|a|U|1599
9GXX|1|a|C|1600
9GXX|1|a|G|1601
9GXX|1|a|U|1602
9GXX|1|a|A|1603

Current chains

Chain a

23S rRNA

Nearby chains

Chain s

Large ribosomal subunit protein uL23