J4_9GY4_007
3D structure
- PDB id
- 9GY4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 60S ribosomal subunit in complex with E3-UFM1 ligase and RQC machinery components NEMF and LTN1 (Composite map)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- 9GY4|1|5|G|3823
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GY4_007 not in the Motif Atlas
- Homologous match to J4_8CRE_006
- Geometric discrepancy: 0.1301
- The information below is about J4_8CRE_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_07509.2
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9GY4|1|5|G|3634
9GY4|1|5|A|3635
9GY4|1|5|C|3636
9GY4|1|5|U|3637
9GY4|1|5|G|3638
*
9GY4|1|5|C|3650
9GY4|1|5|A|3651
9GY4|1|5|A|3652
9GY4|1|5|A|3653
9GY4|1|5|G|3654
*
9GY4|1|5|U|3690
9GY4|1|5|G|3691
9GY4|1|5|A|3692
9GY4|1|5|U|3693
9GY4|1|5|U|3694
*
9GY4|1|5|A|3821
9GY4|1|5|U|3822
9GY4|1|5|G|3823
9GY4|1|5|A|3824
9GY4|1|5|A|3825
9GY4|1|5|C|3826
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain Lp
- 60S ribosomal protein L37a
- Chain a
- 60S ribosomal protein L8
Coloring options: