J4_9H0L_001

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9H0L|1|A|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H0L_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.1221

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9H0L|1|A|G|115
9H0L|1|A|A|116
9H0L|1|A|G|117
9H0L|1|A|U|118
9H0L|1|A|A|119
9H0L|1|A|A|120
9H0L|1|A|U|121
9H0L|1|A|G|122
*
9H0L|1|A|U|239
9H0L|1|A|G|240
*
9H0L|1|A|C|286
9H0L|1|A|U|287
9H0L|1|A|A|288
9H0L|1|A|G|289
*
9H0L|1|A|C|311
9H0L|1|A|C|312

Current chains

Chain A

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17