J4_9H0L_002

3D structure

PDB id

9H0L (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with cognate tRNASer3 bound to A-site AGC codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9H0L|1|A|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H0L_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.0914

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9H0L|1|A|G|142
9H0L|1|A|A|143
9H0L|1|A|G|144
*
9H0L|1|A|C|178
9H0L|1|A|A|179
9H0L|1|A|U|180
9H0L|1|A|A|181
9H0L|1|A|A|182
9H0L|1|A|C|183
9H0L|1|A|G|184
*
9H0L|1|A|C|193
9H0L|1|A|C|194
9H0L|1|A|A|195
9H0L|1|A|A|196
9H0L|1|A|A|197
9H0L|1|A|G|198
*
9H0L|1|A|U|219
9H0L|1|A|G|220
9H0L|1|A|C|221

Current chains

Chain A

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20