J4_9H3G_011

3D structure

PDB id

9H3G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

1.82 Å

Loop

Sequence

UAA*UC*GCU*GGG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_37757.2

Basepair signature

cWW-tSS-cWW-cWW-cWW-cWW

Number of instances in this motif group

4

Unit IDs

9H3G|1|A|U|3008
9H3G|1|A|A|3009
9H3G|1|A|A|3010
*
9H3G|1|A|U|3040
9H3G|1|A|C|3041
*
9H3G|1|A|G|3096
9H3G|1|A|C|3097
9H3G|1|A|U|3098
*
9H3G|1|A|G|3132
9H3G|1|A|G|3133
9H3G|1|A|G|3134

Current chains

Chain A

Ribosomal RNA 25S

Nearby chains

Chain BH

Large ribosomal subunit protein uL13y

Chain BI

Large ribosomal subunit protein uL14x/uL14z/uL14y

Chain BS

Large ribosomal subunit protein uL3z