J4_9H3O_002

3D structure

PDB id

9H3O (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L22)-_GAC

Experimental method

ELECTRON MICROSCOPY

Resolution

4.54 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H3O_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.2117

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9H3O|1|A|G|297
9H3O|1|A|G|298
9H3O|1|A|A|299
9H3O|1|A|A|300
9H3O|1|A|G|301
*
9H3O|1|A|C|316
9H3O|1|A|G|317
9H3O|1|A|C|318
9H3O|1|A|G|319
*
9H3O|1|A|C|323
9H3O|1|A|A|324
9H3O|1|A|G|325
*
9H3O|1|A|C|337
9H3O|1|A|G|338
9H3O|1|A|U|339
9H3O|1|A|A|340
9H3O|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24