J4_9H3Q_003

3D structure

PDB id

9H3Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-~H61

Experimental method

ELECTRON MICROSCOPY

Resolution

4.02 Å

Loop

Sequence

AUAAGUAACGAUAAA*UC*GCUUGAGAGAAC*GACUCAGUGAAAUU

Length

43 nucleotides

Bulged bases

9H3Q|1|A|G|1271, 9H3Q|1|A|A|1272, 9H3Q|1|A|U|1273, 9H3Q|1|A|A|1275, 9H3Q|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H3Q|1|A|A|1262
9H3Q|1|A|U|1263
9H3Q|1|A|A|1264
9H3Q|1|A|A|1265
9H3Q|1|A|G|1266
9H3Q|1|A|U|1267
9H3Q|1|A|A|1268
9H3Q|1|A|A|1269
9H3Q|1|A|C|1270
9H3Q|1|A|G|1271
9H3Q|1|A|A|1272
9H3Q|1|A|U|1273
9H3Q|1|A|A|1274
9H3Q|1|A|A|1275
9H3Q|1|A|A|1276
*
9H3Q|1|A|U|1294
9H3Q|1|A|C|1295
*
9H3Q|1|A|G|1645
9H3Q|1|A|C|1646
9H3Q|1|A|U|1647
9H3Q|1|A|U|1648
9H3Q|1|A|G|1649
9H3Q|1|A|A|1650
9H3Q|1|A|G|1651
9H3Q|1|A|A|1652
9H3Q|1|A|G|1653
9H3Q|1|A|A|1654
9H3Q|1|A|A|1655
9H3Q|1|A|C|1656
*
9H3Q|1|A|G|2004
9H3Q|1|A|A|2005
9H3Q|1|A|C|2006
9H3Q|1|A|U|2007
9H3Q|1|A|C|2008
9H3Q|1|A|A|2009
9H3Q|1|A|G|2010
9H3Q|1|A|U|2011
9H3Q|1|A|G|2012
9H3Q|1|A|A|2013
9H3Q|1|A|A|2014
9H3Q|1|A|A|2015
9H3Q|1|A|U|2016
9H3Q|1|A|U|2017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17