J4_9H3R_001

3D structure

PDB id

9H3R (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

4.12 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9H3R|1|A|A|371, 9H3R|1|A|G|372, 9H3R|1|A|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H3R_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.3377

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9H3R|1|A|C|268
9H3R|1|A|C|269
*
9H3R|1|A|G|370
9H3R|1|A|A|371
9H3R|1|A|G|372
9H3R|1|A|U|373
9H3R|1|A|A|374
9H3R|1|A|G|375
*
9H3R|1|A|U|399
9H3R|1|A|G|400
9H3R|1|A|A|401
9H3R|1|A|A|402
9H3R|1|A|U|403
9H3R|1|A|A|404
9H3R|1|A|U|405
9H3R|1|A|G|406
*
9H3R|1|A|C|421
9H3R|1|A|A|422
9H3R|1|A|A|423
9H3R|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28