J4_9H3S_001

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9H3S|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H3S_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1485

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9H3S|1|A|C|268
9H3S|1|A|C|269
*
9H3S|1|A|G|370
9H3S|1|A|A|371
9H3S|1|A|G|372
9H3S|1|A|U|373
9H3S|1|A|A|374
9H3S|1|A|G|375
*
9H3S|1|A|U|399
9H3S|1|A|G|400
9H3S|1|A|A|401
9H3S|1|A|A|402
9H3S|1|A|U|403
9H3S|1|A|A|404
9H3S|1|A|U|405
9H3S|1|A|G|406
*
9H3S|1|A|C|421
9H3S|1|A|A|422
9H3S|1|A|A|423
9H3S|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain H

Large ribosomal subunit protein bL9

Chain X

Large ribosomal subunit protein bL28