J4_9H3Y_008

3D structure

PDB id

9H3Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor 50S_(L16)-

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9H3Y|1|A|U|1971

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H3Y_008 not in the Motif Atlas

Homologous match to J4_9DFE_008

Geometric discrepancy: 0.1994

The information below is about J4_9DFE_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9H3Y|1|A|C|1833
9H3Y|1|A|U|1834
9H3Y|1|A|G|1835
*
9H3Y|1|A|C|1905
9H3Y|1|A|G|1906
*
9H3Y|1|A|C|1924
9H3Y|1|A|C|1925
9H3Y|1|A|U|1926
9H3Y|1|A|A|1927
9H3Y|1|A|A|1928
9H3Y|1|A|G|1929
9H3Y|1|A|G|1930
9H3Y|1|A|U|1931
9H3Y|1|A|A|1932
9H3Y|1|A|G|1933
*
9H3Y|1|A|C|1967
9H3Y|1|A|G|1968
9H3Y|1|A|A|1969
9H3Y|1|A|A|1970
9H3Y|1|A|U|1971
9H3Y|1|A|G|1972

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2