J4_9H6I_008
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GAC(PSU)G*CAAAG*UGAUU*A(PSU)UA(A2M)C
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|G|2129
9H6I|1|A|A|2130
9H6I|1|A|C|2131
9H6I|1|A|PSU|2132
9H6I|1|A|G|2133
*
9H6I|1|A|C|2145
9H6I|1|A|A|2146
9H6I|1|A|A|2147
9H6I|1|A|A|2148
9H6I|1|A|G|2149
*
9H6I|1|A|U|2184
9H6I|1|A|G|2185
9H6I|1|A|A|2186
9H6I|1|A|U|2187
9H6I|1|A|U|2188
*
9H6I|1|A|A|2315
9H6I|1|A|PSU|2316
9H6I|1|A|U|2317
9H6I|1|A|A|2318
9H6I|1|A|A2M|2319
9H6I|1|A|C|2320
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain BC
- Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v
- Chain BE
- Large ribosomal subunit protein eL43y
- Chain BQ
- Large ribosomal subunit protein uL2z
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: