J4_9H6I_009
3D structure
- PDB id
- 9H6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUG*CG*CUUAAGGUAG*UGAA(PSU)G
- Length
- 21 nucleotides
- Bulged bases
- 9H6I|1|A|PSU|2312
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9H6I|1|A|C|2190
9H6I|1|A|U|2191
9H6I|1|A|G|2192
*
9H6I|1|A|C|2246
9H6I|1|A|G|2247
*
9H6I|1|A|C|2265
9H6I|1|A|U|2266
9H6I|1|A|U|2267
9H6I|1|A|A|2268
9H6I|1|A|A|2269
9H6I|1|A|G|2270
9H6I|1|A|G|2271
9H6I|1|A|U|2272
9H6I|1|A|A|2273
9H6I|1|A|G|2274
*
9H6I|1|A|U|2308
9H6I|1|A|G|2309
9H6I|1|A|A|2310
9H6I|1|A|A|2311
9H6I|1|A|PSU|2312
9H6I|1|A|G|2313
Current chains
- Chain A
- Ribosomal RNA 25S
Nearby chains
- Chain BC
- Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v
- Chain BQ
- Large ribosomal subunit protein uL2z
- Chain W2
- Transfer RNA; tRNA
- Chain h1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: