J4_9H6I_015

3D structure

PDB id

9H6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Arabidopsis thaliana 80S ribosome in complex with P- and E-site tRNAs, mRNA, and thermospermine

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

AAG*CGAAAG*CCA(PSU)AAACGAUG*(PSU)U

Length

23 nucleotides

Bulged bases

9H6I|1|h1|A|625, 9H6I|1|h1|A|1027, 9H6I|1|h1|C|1029, 9H6I|1|h1|A|1031

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9H6I|1|h1|A|624
9H6I|1|h1|A|625
9H6I|1|h1|G|626
*
9H6I|1|h1|C|976
9H6I|1|h1|G|977
9H6I|1|h1|A|978
9H6I|1|h1|A|979
9H6I|1|h1|A|980
9H6I|1|h1|G|981
*
9H6I|1|h1|C|1022
9H6I|1|h1|C|1023
9H6I|1|h1|A|1024
9H6I|1|h1|PSU|1025
9H6I|1|h1|A|1026
9H6I|1|h1|A|1027
9H6I|1|h1|A|1028
9H6I|1|h1|C|1029
9H6I|1|h1|G|1030
9H6I|1|h1|A|1031
9H6I|1|h1|U|1032
9H6I|1|h1|G|1033
*
9H6I|1|h1|PSU|1104
9H6I|1|h1|U|1105

Current chains

Chain h1

Ribosomal RNA 18S

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AE

Small ribosomal subunit protein uS8z/uS8w

Chain BC

Small ribosomal subunit protein eS32 eS32z/eS32y/eS32x/eS32w/eS32v

Chain Da

Small ribosomal subunit protein uS15y

Chain Ma

Small ribosomal subunit protein eS26y

Chain Ua

Small ribosomal subunit protein uS11y

Chain Va

Small ribosomal subunit protein uS12y

Chain Xa

Small ribosomal subunit protein uS17z