3D structure

PDB id
9HA1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
4.17 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
9HA1|1|A|G|1271, 9HA1|1|A|A|1272, 9HA1|1|A|U|1273, 9HA1|1|A|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9HA1_004 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.2695
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

9HA1|1|A|C|1270
9HA1|1|A|G|1271
9HA1|1|A|A|1272
9HA1|1|A|U|1273
9HA1|1|A|A|1274
9HA1|1|A|A|1275
9HA1|1|A|A|1276
*
9HA1|1|A|U|1294
9HA1|1|A|C|1295
*
9HA1|1|A|G|1645
9HA1|1|A|C|1646
9HA1|1|A|U|1647
9HA1|1|A|U|1648
*
9HA1|1|A|A|2009
9HA1|1|A|G|2010

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain N
Large ribosomal subunit protein bL17

Coloring options:


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