J4_9HA1_004

3D structure

PDB id

9HA1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)- precursor states supplemented with Api137 - Canonical PET exit Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.17 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9HA1|1|A|G|1271, 9HA1|1|A|A|1272, 9HA1|1|A|U|1273, 9HA1|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA1_004 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.2695

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9HA1|1|A|C|1270
9HA1|1|A|G|1271
9HA1|1|A|A|1272
9HA1|1|A|U|1273
9HA1|1|A|A|1274
9HA1|1|A|A|1275
9HA1|1|A|A|1276
*
9HA1|1|A|U|1294
9HA1|1|A|C|1295
*
9HA1|1|A|G|1645
9HA1|1|A|C|1646
9HA1|1|A|U|1647
9HA1|1|A|U|1648
*
9HA1|1|A|A|2009
9HA1|1|A|G|2010

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17