J4_9HA3_001

3D structure

PDB id

9HA3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_(L22)-~H61 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.62 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9HA3|1|A|U|403, 9HA3|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA3_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.5423

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9HA3|1|A|C|268
9HA3|1|A|C|269
*
9HA3|1|A|G|370
9HA3|1|A|A|371
9HA3|1|A|G|372
9HA3|1|A|U|373
9HA3|1|A|A|374
9HA3|1|A|G|375
*
9HA3|1|A|U|399
9HA3|1|A|G|400
9HA3|1|A|A|401
9HA3|1|A|A|402
9HA3|1|A|U|403
9HA3|1|A|A|404
9HA3|1|A|U|405
9HA3|1|A|G|406
*
9HA3|1|A|C|421
9HA3|1|A|A|422
9HA3|1|A|A|423
9HA3|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains