J4_9HA4_002

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA4_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1342

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9HA4|1|A|G|297
9HA4|1|A|G|298
9HA4|1|A|A|299
9HA4|1|A|A|300
9HA4|1|A|G|301
*
9HA4|1|A|C|316
9HA4|1|A|G|317
9HA4|1|A|C|318
9HA4|1|A|G|319
*
9HA4|1|A|C|323
9HA4|1|A|A|324
9HA4|1|A|G|325
*
9HA4|1|A|C|337
9HA4|1|A|G|338
9HA4|1|A|U|339
9HA4|1|A|A|340
9HA4|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24