J4_9HA4_004

3D structure

PDB id

9HA4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_(L22)- precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

4.26 Å

Loop

Sequence

AUAAGUAACGAUAAA*UC*GCUU*AGUGAAAUU

Length

30 nucleotides

Bulged bases

9HA4|1|A|G|1271, 9HA4|1|A|A|1272, 9HA4|1|A|U|1273, 9HA4|1|A|A|1274, 9HA4|1|A|A|1275, 9HA4|1|A|C|1646, 9HA4|1|A|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HA4|1|A|A|1262
9HA4|1|A|U|1263
9HA4|1|A|A|1264
9HA4|1|A|A|1265
9HA4|1|A|G|1266
9HA4|1|A|U|1267
9HA4|1|A|A|1268
9HA4|1|A|A|1269
9HA4|1|A|C|1270
9HA4|1|A|G|1271
9HA4|1|A|A|1272
9HA4|1|A|U|1273
9HA4|1|A|A|1274
9HA4|1|A|A|1275
9HA4|1|A|A|1276
*
9HA4|1|A|U|1294
9HA4|1|A|C|1295
*
9HA4|1|A|G|1645
9HA4|1|A|C|1646
9HA4|1|A|U|1647
9HA4|1|A|U|1648
*
9HA4|1|A|A|2009
9HA4|1|A|G|2010
9HA4|1|A|U|2011
9HA4|1|A|G|2012
9HA4|1|A|A|2013
9HA4|1|A|A|2014
9HA4|1|A|A|2015
9HA4|1|A|U|2016
9HA4|1|A|U|2017

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain N

Large ribosomal subunit protein bL17