J4_9HA5_001

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9HA5|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA5_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1798

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9HA5|1|A|C|268
9HA5|1|A|C|269
*
9HA5|1|A|G|370
9HA5|1|A|A|371
9HA5|1|A|G|372
9HA5|1|A|U|373
9HA5|1|A|A|374
9HA5|1|A|G|375
*
9HA5|1|A|U|399
9HA5|1|A|G|400
9HA5|1|A|A|401
9HA5|1|A|A|402
9HA5|1|A|U|403
9HA5|1|A|A|404
9HA5|1|A|U|405
9HA5|1|A|G|406
*
9HA5|1|A|C|421
9HA5|1|A|A|422
9HA5|1|A|A|423
9HA5|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains