J4_9HA5_005

3D structure

PDB id

9HA5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C_L2 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9HA5|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA5_005 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1222

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9HA5|1|A|U|1313
9HA5|1|A|C|1314
*
9HA5|1|A|G|1338
9HA5|1|A|G|1339
9HA5|1|A|U|1340
9HA5|1|A|G|1341
9HA5|1|A|A|1342
9HA5|1|A|G|1343
*
9HA5|1|A|C|1404
9HA5|1|A|U|1405
*
9HA5|1|A|A|1597
9HA5|1|A|A|1598
9HA5|1|A|U|1599
9HA5|1|A|C|1600
9HA5|1|A|G|1601
9HA5|1|A|U|1602
9HA5|1|A|A|1603

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain T

Large ribosomal subunit protein uL23