3D structure

PDB id
9HA6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mature 50S subunit supplemented with Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
3.08 Å

Loop

Sequence
CAAG*CGAAG*CGAG*CGUUAAG
Length
20 nucleotides
Bulged bases
9HA6|1|A|U|653, 9HA6|1|A|A|654
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9HA6_002 not in the Motif Atlas
Homologous match to J4_5J7L_020
Geometric discrepancy: 0.1702
The information below is about J4_5J7L_020
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_60168.1
Basepair signature
cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW
Number of instances in this motif group
2

Unit IDs

9HA6|1|A|C|601
9HA6|1|A|A|602
9HA6|1|A|A|603
9HA6|1|A|G|604
*
9HA6|1|A|C|624
9HA6|1|A|G|625
9HA6|1|A|A|626
9HA6|1|A|A|627
9HA6|1|A|G|628
*
9HA6|1|A|C|635
9HA6|1|A|G|636
9HA6|1|A|A|637
9HA6|1|A|G|638
*
9HA6|1|A|C|650
9HA6|1|A|G|651
9HA6|1|A|U|652
9HA6|1|A|U|653
9HA6|1|A|A|654
9HA6|1|A|A|655
9HA6|1|A|G|656

Current chains

Chain A
23S ribosomal rRNA

Nearby chains

Chain 3
Large ribosomal subunit protein bL35
Chain E
Large ribosomal subunit protein uL4
Chain L
Large ribosomal subunit protein uL15

Coloring options:


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