J4_9HA6_004

3D structure

PDB id

9HA6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mature 50S subunit supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.08 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

9HA6|1|A|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HA6_004 not in the Motif Atlas

Homologous match to J4_5J7L_022

Geometric discrepancy: 0.1163

The information below is about J4_5J7L_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9HA6|1|A|G|1310
9HA6|1|A|G|1311
9HA6|1|A|U|1312
9HA6|1|A|U|1313
9HA6|1|A|C|1314
*
9HA6|1|A|G|1338
9HA6|1|A|G|1339
9HA6|1|A|U|1340
9HA6|1|A|G|1341
9HA6|1|A|A|1342
9HA6|1|A|G|1343
*
9HA6|1|A|C|1404
9HA6|1|A|U|1405
*
9HA6|1|A|A|1597
9HA6|1|A|A|1598
9HA6|1|A|U|1599
9HA6|1|A|C|1600
9HA6|1|A|G|1601
9HA6|1|A|U|1602
9HA6|1|A|A|1603
9HA6|1|A|C|1604

Current chains

Chain A

23S ribosomal rRNA

Nearby chains

Chain 2

Large ribosomal subunit protein bL34

Chain T

Large ribosomal subunit protein uL23