J4_9HAI_001

3D structure

PDB id

9HAI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Pooled 50S subunit C-CP_L2-L28 precursor states supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

3.01 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9HAI|1|A|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HAI_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.2291

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9HAI|1|A|C|268
9HAI|1|A|C|269
*
9HAI|1|A|G|370
9HAI|1|A|A|371
9HAI|1|A|G|372
9HAI|1|A|U|373
9HAI|1|A|A|374
9HAI|1|A|G|375
*
9HAI|1|A|U|399
9HAI|1|A|G|400
9HAI|1|A|A|401
9HAI|1|A|A|402
9HAI|1|A|U|403
9HAI|1|A|A|404
9HAI|1|A|U|405
9HAI|1|A|G|406
*
9HAI|1|A|C|421
9HAI|1|A|A|422
9HAI|1|A|A|423
9HAI|1|A|G|424

Current chains

Chain A

23S ribosomal RNA

Nearby chains