J4_9HAM_002

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

9HAM|1|A|U|339

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HAM_002 not in the Motif Atlas

Homologous match to J4_5J7L_019

Geometric discrepancy: 0.1939

The information below is about J4_5J7L_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_71729.5

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

4

Unit IDs

9HAM|1|A|G|297
9HAM|1|A|G|298
9HAM|1|A|A|299
9HAM|1|A|A|300
9HAM|1|A|G|301
*
9HAM|1|A|C|316
9HAM|1|A|G|317
9HAM|1|A|C|318
9HAM|1|A|G|319
*
9HAM|1|A|C|323
9HAM|1|A|A|324
9HAM|1|A|G|325
*
9HAM|1|A|C|337
9HAM|1|A|G|338
9HAM|1|A|U|339
9HAM|1|A|A|340
9HAM|1|A|C|341

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain U

Large ribosomal subunit protein uL24