J4_9HAM_003

3D structure

PDB id

9HAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

C_(L29)-/(L22)- precursor supplemented with Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

5.06 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

9HAM|1|A|U|653, 9HAM|1|A|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HAM_003 not in the Motif Atlas

Homologous match to J4_5J7L_020

Geometric discrepancy: 0.4608

The information below is about J4_5J7L_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_60168.1

Basepair signature

cWW-F-F-F-F-F-cWW-F-F-F-cWW-F-tSS-F-cWW

Number of instances in this motif group

2

Unit IDs

9HAM|1|A|C|601
9HAM|1|A|A|602
9HAM|1|A|A|603
9HAM|1|A|G|604
*
9HAM|1|A|C|624
9HAM|1|A|G|625
9HAM|1|A|A|626
9HAM|1|A|A|627
9HAM|1|A|G|628
*
9HAM|1|A|C|635
9HAM|1|A|G|636
9HAM|1|A|A|637
9HAM|1|A|G|638
*
9HAM|1|A|C|650
9HAM|1|A|G|651
9HAM|1|A|U|652
9HAM|1|A|U|653
9HAM|1|A|A|654
9HAM|1|A|A|655
9HAM|1|A|G|656

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15