J4_9HLZ_006

3D structure

PDB id

9HLZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activators Aep1, Aep2 and Atp25 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CUG*CA*UAUAAUGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9HLZ|1|AA|U|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HLZ|1|AA|C|1741
9HLZ|1|AA|U|1742
9HLZ|1|AA|G|1743
*
9HLZ|1|AA|C|1806
9HLZ|1|AA|A|1807
*
9HLZ|1|AA|U|1824
9HLZ|1|AA|A|1825
9HLZ|1|AA|U|1826
9HLZ|1|AA|A|1827
9HLZ|1|AA|A|1828
9HLZ|1|AA|U|1829
9HLZ|1|AA|G|1830
9HLZ|1|AA|U|1831
9HLZ|1|AA|A|1832
9HLZ|1|AA|G|1833
*
9HLZ|1|AA|U|1867
9HLZ|1|AA|G|1868
9HLZ|1|AA|A|1869
9HLZ|1|AA|A|1870
9HLZ|1|AA|U|1871
9HLZ|1|AA|G|1872

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain BB

Large ribosomal subunit protein uL2m

Chain r

Small subunit ribosomal RNA; SSU rRNA