J4_9HM0_001

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UAAUAA*UAUAA*UAUAGUAAGUAC*GGAAAG

Length

29 nucleotides

Bulged bases

9HM0|1|AA|U|69, 9HM0|1|AA|U|93, 9HM0|1|AA|U|383, 9HM0|1|AA|A|384

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|U|66
9HM0|1|AA|A|67
9HM0|1|AA|A|68
9HM0|1|AA|U|69
9HM0|1|AA|A|70
9HM0|1|AA|A|71
*
9HM0|1|AA|U|91
9HM0|1|AA|A|92
9HM0|1|AA|U|93
9HM0|1|AA|A|94
9HM0|1|AA|A|95
*
9HM0|1|AA|U|381
9HM0|1|AA|A|382
9HM0|1|AA|U|383
9HM0|1|AA|A|384
9HM0|1|AA|G|385
9HM0|1|AA|U|386
9HM0|1|AA|A|387
9HM0|1|AA|A|388
9HM0|1|AA|G|389
9HM0|1|AA|U|390
9HM0|1|AA|A|391
9HM0|1|AA|C|392
*
9HM0|1|AA|G|399
9HM0|1|AA|G|400
9HM0|1|AA|A|401
9HM0|1|AA|A|402
9HM0|1|AA|A|403
9HM0|1|AA|G|404

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain DD

Large ribosomal subunit protein uL4m

Chain PP

Large ribosomal subunit protein uL23m

Chain QQ

Large ribosomal subunit protein uL24m

Chain YY

Large ribosomal subunit protein bL34m