J4_9HM0_002

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUCCUAAU*AA*UAU*AAUA

Length

17 nucleotides

Bulged bases

9HM0|1|AA|A|1143, 9HM0|1|AA|A|1169, 9HM0|1|AA|U|1170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|U|930
9HM0|1|AA|U|931
9HM0|1|AA|C|932
9HM0|1|AA|C|933
9HM0|1|AA|U|934
9HM0|1|AA|A|935
9HM0|1|AA|A|936
9HM0|1|AA|U|937
*
9HM0|1|AA|A|1126
9HM0|1|AA|A|1127
*
9HM0|1|AA|U|1142
9HM0|1|AA|A|1143
9HM0|1|AA|U|1144
*
9HM0|1|AA|A|1168
9HM0|1|AA|A|1169
9HM0|1|AA|U|1170
9HM0|1|AA|A|1171

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain HH

Large ribosomal subunit protein uL13m

Chain UU

Large ribosomal subunit protein uL30m

Chain aa

Large ribosomal subunit protein mL58

Chain cc

Large ribosomal subunit protein mL60