J4_9HM0_004

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGUU*AAAA*UA*UACCGUAAU

Length

19 nucleotides

Bulged bases

9HM0|1|AA|U|1342, 9HM0|1|AA|A|1352

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|G|1340
9HM0|1|AA|G|1341
9HM0|1|AA|U|1342
9HM0|1|AA|U|1343
*
9HM0|1|AA|A|1351
9HM0|1|AA|A|1352
9HM0|1|AA|A|1353
9HM0|1|AA|A|1354
*
9HM0|1|AA|U|1410
9HM0|1|AA|A|1411
*
9HM0|1|AA|U|1549
9HM0|1|AA|A|1550
9HM0|1|AA|C|1551
9HM0|1|AA|C|1552
9HM0|1|AA|G|1553
9HM0|1|AA|U|1554
9HM0|1|AA|A|1555
9HM0|1|AA|A|1556
9HM0|1|AA|U|1557

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 33

Large ribosomal subunit protein mL41

Chain PP

Large ribosomal subunit protein uL23m

Chain WW

Large ribosomal subunit protein bL32m

Chain YY

Large ribosomal subunit protein bL34m

Chain dd

Large ribosomal subunit protein mL67