J4_9HM0_005

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUG*CACCG*UGAACU*ACGUAAU

Length

23 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|A|1679
9HM0|1|AA|A|1680
9HM0|1|AA|C|1681
9HM0|1|AA|U|1682
9HM0|1|AA|G|1683
*
9HM0|1|AA|C|1695
9HM0|1|AA|A|1696
9HM0|1|AA|C|1697
9HM0|1|AA|C|1698
9HM0|1|AA|G|1699
*
9HM0|1|AA|U|1735
9HM0|1|AA|G|1736
9HM0|1|AA|A|1737
9HM0|1|AA|A|1738
9HM0|1|AA|C|1739
9HM0|1|AA|U|1740
*
9HM0|1|AA|A|1873
9HM0|1|AA|C|1874
9HM0|1|AA|G|1875
9HM0|1|AA|U|1876
9HM0|1|AA|A|1877
9HM0|1|AA|A|1878
9HM0|1|AA|U|1879

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain BB

Large ribosomal subunit protein uL2m

Chain r

Small subunit ribosomal RNA; SSU rRNA