J4_9HM0_006

3D structure

PDB id

9HM0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Translational activator Aep3 in complex with mRNA and the yeast mitochondrial ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUG*CA*UAUAAUGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9HM0|1|AA|U|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9HM0|1|AA|C|1741
9HM0|1|AA|U|1742
9HM0|1|AA|G|1743
*
9HM0|1|AA|C|1806
9HM0|1|AA|A|1807
*
9HM0|1|AA|U|1824
9HM0|1|AA|A|1825
9HM0|1|AA|U|1826
9HM0|1|AA|A|1827
9HM0|1|AA|A|1828
9HM0|1|AA|U|1829
9HM0|1|AA|G|1830
9HM0|1|AA|U|1831
9HM0|1|AA|A|1832
9HM0|1|AA|G|1833
*
9HM0|1|AA|U|1867
9HM0|1|AA|G|1868
9HM0|1|AA|A|1869
9HM0|1|AA|A|1870
9HM0|1|AA|U|1871
9HM0|1|AA|G|1872

Current chains

Chain AA

21S mitochondrial rRNA

Nearby chains

Chain 1

Small ribosomal subunit protein mS38

Chain BB

Large ribosomal subunit protein uL2m

Chain r

Small subunit ribosomal RNA; SSU rRNA