J4_9HUQ_001

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9HUQ|1|b|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HUQ_001 not in the Motif Atlas

Homologous match to J4_7A0S_001

Geometric discrepancy: 0.3069

The information below is about J4_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9HUQ|1|b|C|268
9HUQ|1|b|C|269
*
9HUQ|1|b|G|370
9HUQ|1|b|A|371
9HUQ|1|b|G|372
9HUQ|1|b|U|373
9HUQ|1|b|A|374
9HUQ|1|b|G|375
*
9HUQ|1|b|U|399
9HUQ|1|b|G|400
9HUQ|1|b|A|401
9HUQ|1|b|A|402
9HUQ|1|b|U|403
9HUQ|1|b|A|404
9HUQ|1|b|U|405
9HUQ|1|b|G|406
*
9HUQ|1|b|C|421
9HUQ|1|b|A|422
9HUQ|1|b|A|423
9HUQ|1|b|G|424

Current chains

Chain b

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28

Chain h

Large ribosomal subunit protein bL9