J4_9HUQ_006

3D structure

PDB id

9HUQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 47, with P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.49 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9HUQ|1|b|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HUQ_006 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2701

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9HUQ|1|b|U|1313
9HUQ|1|b|C|1314
*
9HUQ|1|b|G|1338
9HUQ|1|b|G|1339
9HUQ|1|b|U|1340
9HUQ|1|b|G|1341
9HUQ|1|b|A|1342
9HUQ|1|b|G|1343
*
9HUQ|1|b|C|1404
9HUQ|1|b|U|1405
*
9HUQ|1|b|A|1597
9HUQ|1|b|A|1598
9HUQ|1|b|U|1599
9HUQ|1|b|C|1600
9HUQ|1|b|G|1601
9HUQ|1|b|U|1602
9HUQ|1|b|A|1603

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL23