J4_9HY6_007

3D structure

PDB id

9HY6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with nascent chain at linker length of 31 amino acids, with mRNA, P-site and A-site tRNAs

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9HY6|1|b|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HY6_007 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2701

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9HY6|1|b|U|1313
9HY6|1|b|C|1314
*
9HY6|1|b|G|1338
9HY6|1|b|G|1339
9HY6|1|b|U|1340
9HY6|1|b|G|1341
9HY6|1|b|A|1342
9HY6|1|b|G|1343
*
9HY6|1|b|C|1404
9HY6|1|b|U|1405
*
9HY6|1|b|A|1597
9HY6|1|b|A|1598
9HY6|1|b|U|1599
9HY6|1|b|C|1600
9HY6|1|b|G|1601
9HY6|1|b|U|1602
9HY6|1|b|A|1603

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL23