J4_9HYM_003

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GGAAG*CGCG*CAG*CGUAC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HYM_003 not in the Motif Atlas

Homologous match to J4_7A0S_002

Geometric discrepancy: 0.1735

The information below is about J4_7A0S_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_16174.1

Basepair signature

cWW-tSH-cHH-F-F-tHS-cWW-cWW-F-F-cWW

Number of instances in this motif group

5

Unit IDs

9HYM|1|b|G|297
9HYM|1|b|G|298
9HYM|1|b|A|299
9HYM|1|b|A|300
9HYM|1|b|G|301
*
9HYM|1|b|C|316
9HYM|1|b|G|317
9HYM|1|b|C|318
9HYM|1|b|G|319
*
9HYM|1|b|C|323
9HYM|1|b|A|324
9HYM|1|b|G|325
*
9HYM|1|b|C|337
9HYM|1|b|G|338
9HYM|1|b|U|339
9HYM|1|b|A|340
9HYM|1|b|C|341

Current chains

Chain b

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain u

Large ribosomal subunit protein uL24