J4_9HYM_007

3D structure

PDB id

9HYM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome with complexed filament nascent chain at length 34, with mRNA, P-site and A-site tRNAs, and mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9HYM|1|b|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9HYM_007 not in the Motif Atlas

Homologous match to J4_7A0S_006

Geometric discrepancy: 0.2701

The information below is about J4_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9HYM|1|b|U|1313
9HYM|1|b|C|1314
*
9HYM|1|b|G|1338
9HYM|1|b|G|1339
9HYM|1|b|U|1340
9HYM|1|b|G|1341
9HYM|1|b|A|1342
9HYM|1|b|G|1343
*
9HYM|1|b|C|1404
9HYM|1|b|U|1405
*
9HYM|1|b|A|1597
9HYM|1|b|A|1598
9HYM|1|b|U|1599
9HYM|1|b|C|1600
9HYM|1|b|G|1601
9HYM|1|b|U|1602
9HYM|1|b|A|1603

Current chains

Chain b

23S rRNA

Nearby chains

Chain t

Large ribosomal subunit protein uL23