J4_9I1W_001

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

UC*GAGUCG*CAAAAUG*UAAA

Length

19 nucleotides

Bulged bases

9I1W|1|1|U|291

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|U|113
9I1W|1|1|C|114
*
9I1W|1|1|G|260
9I1W|1|1|A|261
9I1W|1|1|G|262
9I1W|1|1|U|263
9I1W|1|1|C|264
9I1W|1|1|G|265
*
9I1W|1|1|C|286
9I1W|1|1|A|287
9I1W|1|1|A|288
9I1W|1|1|A|289
9I1W|1|1|A|290
9I1W|1|1|U|291
9I1W|1|1|G|292
*
9I1W|1|1|U|309
9I1W|1|1|A|310
9I1W|1|1|A|311
9I1W|1|1|A|312

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LN

Ribosomal protein L15

Chain Lh

Dolichyl-diphosphooligosaccharide--protein glycotransferase

Chain Li

60S ribosomal protein L36