J4_9I1W_008

3D structure

PDB id

9I1W (explore in PDB, NAKB, or RNA 3D Hub)

Description

High resolution structure of the thermophilic 60S ribosomal subunit of Chaetomium thermophilum

Experimental method

ELECTRON MICROSCOPY

Resolution

2.38 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9I1W|1|1|UY1|2277

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I1W|1|1|C|2155
9I1W|1|1|U|2156
9I1W|1|1|G|2157
*
9I1W|1|1|C|2211
9I1W|1|1|G|2212
*
9I1W|1|1|C|2230
9I1W|1|1|U|2231
9I1W|1|1|U|2232
9I1W|1|1|A|2233
9I1W|1|1|A|2234
9I1W|1|1|G|2235
9I1W|1|1|G|2236
9I1W|1|1|U|2237
9I1W|1|1|A|2238
9I1W|1|1|G|2239
*
9I1W|1|1|U|2273
9I1W|1|1|G|2274
9I1W|1|1|A|2275
9I1W|1|1|A|2276
9I1W|1|1|UY1|2277
9I1W|1|1|G|2278

Current chains

Chain 1

26S rRNA

Nearby chains

Chain LA

60S ribosomal protein L2-like protein

Chain Ln

60S ribosomal protein L41-A