J4_9I2D_001
3D structure
- PDB id
- 9I2D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- NMT1-NAC bound human RNC with 10 amino acid ARF1-linker
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.19 Å
Loop
- Sequence
- UUGG*UU*AGGUCC*GA
- Length
- 14 nucleotides
- Bulged bases
- 9I2D|1|CP|U|8, 9I2D|1|CP|U|46, 9I2D|1|CP|C|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9I2D_001 not in the Motif Atlas
- Homologous match to J4_4QEI_001
- Geometric discrepancy: 0.2446
- The information below is about J4_4QEI_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_35610.2
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9I2D|1|CP|U|7
9I2D|1|CP|U|8
9I2D|1|CP|G|9
9I2D|1|CP|G|10
*
9I2D|1|CP|U|24
9I2D|1|CP|U|25
*
9I2D|1|CP|A|43
9I2D|1|CP|G|44
9I2D|1|CP|G|45
9I2D|1|CP|U|46
9I2D|1|CP|C|47
9I2D|1|CP|C|48
*
9I2D|1|CP|G|64
9I2D|1|CP|A|65
Current chains
- Chain CP
- prolyl-tRNA
Nearby chains
- Chain CR
- Eukaryotic peptide chain release factor subunit 1
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Ribosomal protein uL16-like
- Chain LJ
- 60S ribosomal protein L11
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