J4_9I2D_005

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

9I2D|1|L5|A|2366, 9I2D|1|L5|U|2369, 9I2D|1|L5|U|2828

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|C|2365
9I2D|1|L5|A|2366
9I2D|1|L5|A|2367
9I2D|1|L5|A|2368
9I2D|1|L5|U|2369
9I2D|1|L5|A|2370
9I2D|1|L5|U|2371
*
9I2D|1|L5|A|2389
9I2D|1|L5|G|2390
9I2D|1|L5|G|2391
*
9I2D|1|L5|C|2824
9I2D|1|L5|A|2825
9I2D|1|L5|U|2826
9I2D|1|L5|G|2827
9I2D|1|L5|U|2828
9I2D|1|L5|U|2829
*
9I2D|1|L5|A|3856
9I2D|1|L5|G|3857

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LP

60S ribosomal protein L17

Chain LR

60S ribosomal protein L19

Chain Ld

60S ribosomal protein L31

Chain NB

Isoform 2 of Transcription factor BTF3