J4_9I2D_010

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAAUG

Length

21 nucleotides

Bulged bases

9I2D|1|L5|U|3818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I2D|1|L5|C|3696
9I2D|1|L5|U|3697
9I2D|1|L5|G|3698
*
9I2D|1|L5|C|3752
9I2D|1|L5|G|3753
*
9I2D|1|L5|C|3771
9I2D|1|L5|U|3772
9I2D|1|L5|U|3773
9I2D|1|L5|A|3774
9I2D|1|L5|A|3775
9I2D|1|L5|G|3776
9I2D|1|L5|G|3777
9I2D|1|L5|U|3778
9I2D|1|L5|A|3779
9I2D|1|L5|G|3780
*
9I2D|1|L5|U|3814
9I2D|1|L5|G|3815
9I2D|1|L5|A|3816
9I2D|1|L5|A|3817
9I2D|1|L5|U|3818
9I2D|1|L5|G|3819

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CP

Transfer RNA; tRNA

Chain LA

60S ribosomal protein L8

Chain Ln

60S ribosomal protein L41

Chain S2

Small subunit ribosomal RNA; SSU rRNA