J4_9I2D_013

3D structure

PDB id

9I2D (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMT1-NAC bound human RNC with 10 amino acid ARF1-linker

Experimental method

ELECTRON MICROSCOPY

Resolution

2.19 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

9I2D|1|L5|U|4677

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9I2D_013 not in the Motif Atlas

Homologous match to J4_8GLP_013

Geometric discrepancy: 0.0458

The information below is about J4_8GLP_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69783.1

Basepair signature

cWW-F-F-F-F-cWW-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9I2D|1|L5|G|4587
9I2D|1|L5|U|4588
9I2D|1|L5|A|4589
9I2D|1|L5|A|4590
*
9I2D|1|L5|U|4620
9I2D|1|L5|C|4621
*
9I2D|1|L5|G|4676
9I2D|1|L5|U|4677
9I2D|1|L5|G|4678
*
9I2D|1|L5|C|4712
9I2D|1|L5|G|4713
9I2D|1|L5|C|4714
9I2D|1|L5|C|4715

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23