J4_9I3L_010

3D structure

PDB id

9I3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of E.coli ribosome with filamin mutant Y719E nascent chain at linker length of 47 amino acids, with tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUG*CG*CCUAAGGUAG*CGAAUG

Length

21 nucleotides

Bulged bases

9I3L|1|b|U|1975

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9I3L_010 not in the Motif Atlas

Homologous match to J4_8B0X_012

Geometric discrepancy: 0.0334

The information below is about J4_8B0X_012

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.3

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9I3L|1|b|C|1835
9I3L|1|b|U|1836
9I3L|1|b|G|1837
*
9I3L|1|b|C|1909
9I3L|1|b|G|1910
*
9I3L|1|b|C|1928
9I3L|1|b|C|1929
9I3L|1|b|U|1930
9I3L|1|b|A|1931
9I3L|1|b|A|1932
9I3L|1|b|G|1933
9I3L|1|b|G|1934
9I3L|1|b|U|1935
9I3L|1|b|A|1936
9I3L|1|b|G|1937
*
9I3L|1|b|C|1971
9I3L|1|b|G|1972
9I3L|1|b|A|1973
9I3L|1|b|A|1974
9I3L|1|b|U|1975
9I3L|1|b|G|1976

Current chains

Chain b

23S rRNA

Nearby chains

Chain Z

Transfer RNA; tRNA

Chain c

Large ribosomal subunit protein uL2