J4_9I5T_001

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CC*GAGUAG*UGAAUUGG*UAAG

Length

20 nucleotides

Bulged bases

9I5T|1|A|G|428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5T|1|A|C|246
9I5T|1|A|C|247
*
9I5T|1|A|G|393
9I5T|1|A|A|394
9I5T|1|A|G|395
9I5T|1|A|U|396
9I5T|1|A|A|397
9I5T|1|A|G|398
*
9I5T|1|A|U|422
9I5T|1|A|G|423
9I5T|1|A|A|424
9I5T|1|A|A|425
9I5T|1|A|U|426
9I5T|1|A|U|427
9I5T|1|A|G|428
9I5T|1|A|G|429
*
9I5T|1|A|U|444
9I5T|1|A|A|445
9I5T|1|A|A|446
9I5T|1|A|G|447

Current chains

Chain A

23S rRNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL28