J4_9I5T_003

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGAUAAA*UC*GCUC*GG

Length

15 nucleotides

Bulged bases

9I5T|1|A|G|1300, 9I5T|1|A|A|1301, 9I5T|1|A|U|1302, 9I5T|1|A|A|1304, 9I5T|1|A|U|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5T|1|A|C|1299
9I5T|1|A|G|1300
9I5T|1|A|A|1301
9I5T|1|A|U|1302
9I5T|1|A|A|1303
9I5T|1|A|A|1304
9I5T|1|A|A|1305
*
9I5T|1|A|U|1323
9I5T|1|A|C|1324
*
9I5T|1|A|G|1681
9I5T|1|A|C|1682
9I5T|1|A|U|1683
9I5T|1|A|C|1684
*
9I5T|1|A|G|2019
9I5T|1|A|G|2020

Current chains

Chain A

23S rRNA

Nearby chains

Chain 4

Large ribosomal subunit protein bL32

Chain Q

Large ribosomal subunit protein bL17

Chain V

Large ribosomal subunit protein uL22