J4_9I5T_005

3D structure

PDB id

9I5T (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit of P. gingivalis ribosome with Lefamulin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UC*GGUUAG*CU*ACCCGUA

Length

17 nucleotides

Bulged bases

9I5T|1|A|U|1370

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9I5T|1|A|U|1342
9I5T|1|A|C|1343
*
9I5T|1|A|G|1367
9I5T|1|A|G|1368
9I5T|1|A|U|1369
9I5T|1|A|U|1370
9I5T|1|A|A|1371
9I5T|1|A|G|1372
*
9I5T|1|A|C|1434
9I5T|1|A|U|1435
*
9I5T|1|A|A|1633
9I5T|1|A|C|1634
9I5T|1|A|C|1635
9I5T|1|A|C|1636
9I5T|1|A|G|1637
9I5T|1|A|U|1638
9I5T|1|A|A|1639

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

Large ribosomal subunit protein uL23